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Biochemistry

Competencies
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    • Biochemistry Homepage

         

      Welcome to the Biochemistry course, part of the series for the Pre-Health Sciences Training Certificate. This course and the certificate are designed primarily for learners interested in preparing for and gaining entry to health-related programs and to help address the prerequisites for the Medical College Admission Test (MCAT). This Biochemistry course provides learners with a comprehensive overview of the chemical processes and reactions that occur in living organisms. It explores the fundamental principles of biochemistry and their application to the study of biological systems, including the function of proteins, carbohydrates, lipids, and nucleic acids, as well as their role in metabolism and energy production.

      The Biochemistry course is sponsored in part by the International Development Research Centre and the University of the Incarnate Word School of Osteopathic Medicine. Like all NextGenU.org courses, it is competency-based, using competencies based on the Association of American Medical Colleges’ Medical College Admission Test. It uses learning resources from accredited, academic, professional, and world-class organizations and universities such as Rice University. This course was designed by Alixandria Ali BSc; Kabiru Gulma B. Pharm, MBA, MSc., Ph.D.; Marco Aurelio Hernandez, Ph.D., MSc; MSc; BSc.; Felix Emeka Anyiam, MPH, MScPH, DataSc.; Sherian Bachan MSc, BSc; Reisha Narine MSc, BSc; Aduke Williams BA; Sara Wildman, BSc; Carolina Bustillos MD, DiplEd; Rhonda Prudent BSc; Maryam Musa MBBS; Pablo Baldiviezo MD, MSc, DiplEd; Jenny Tang, BSc, Optometry Candidate (Hons); and Tristan Aaron Wild, BMSc (Hons).

      For publications on NextGenU.org’s courses’ efficacy, see NextGenU.org’s publication page.

       

      There are twelve (12) modules to complete, which provide an introduction to:

      • Module 1: Building Blocks of Biochemistry
      • Module 2: Enzymes
      • Module 3: Non-enzymatic Proteins
      • Module 4: Carbohydrates
      • Module 5: Carbohydrate Metabolism
      • Module 6: Lipids
      • Module 7: Lipid and Amino Acid Metabolism
      • Module 8: DNA
      • Module 9: RNA
      • Module 10: Biological Membranes
      • Module 11: Aerobic Respiration
      • Module 12: Bioenergetics

      The completion time for this course is estimated at 76 hours, comprising 19 hours of learning resources, 39 hours of studying and assimilation of the content, and 18 hours of participating in learning activities and quizzes to assist the learners in synthesizing learning materials. This course is equivalent to 2 credit hours in the U.S. undergraduate/bachelor’s degree system.

      The course requires the completion of all quizzes, discussion forums, and practical activities to receive a course certificate. Practice quizzes are available throughout the course and contain 10 Multiple-Choice Questions each. After you’ve completed each module, quiz, and learning activity, at the end of the course, you’ll have access to a final exam consisting of 40 Multiple-Choice Questions and a chance to evaluate this course. Participants have up to three opportunities to take the final exam and achieve the required passing score of >=70%. Once you’ve passed the final exam and completed the evaluations, you will be able to download a certificate of completion from NextGenU.org and our course’s co-sponsoring organizations. 

      We keep all of your personal information confidential, never sell any of your information, and only use anonymized data for research purposes. Also, we are happy to report your testing information and share your work with anyone (your school, employer, etc.) at your request. 

      Engaging with this Course:

      This free course is aimed at students who have graduated from high school and want to prepare to become a health professional and/or pass the MCAT exam. You may also browse this course for free to learn for your personal enrichment. There are no requirements. 

      To obtain a certificate, a learner must first register for the course and then successfully complete:

      • The pre-test,
      • All the reading requirements,
      • All quizzes and pass with 70% with unlimited attempts,
      • All practical activities,
      • All discussion forums,
      • The final lab activity,
      • The final exam with a minimum of 70% and a maximum of 3 attempts, and
      • The self and course evaluation forms.


      To obtain credit:

      • Complete all requirements listed above for the certificate, and
      • Your learning institution or workplace should approve the partner-university-sponsored NextGenU.org course for educational credit, as they usually would for their learner taking a course anywhere.


      NextGenU.org is happy to provide your institution with:

      • A link to and description of the course training so they can see all of its components, including the co-sponsoring institutions,
      • Your grade on the final exam,
      • Your work products (e.g., discussion forum responses) and any other required or optional shared materials that you produce and authorize to share with them, 
      • Your evaluations -- course and self-assessments,
      • A copy of your certificate of completion with the co-sponsoring organizations listed.


      To obtain a degree, NextGenU.org co-sponsors degree programs with institutional partners. To obtain a full degree co-sponsored with NextGenU.org, registrants must be enrolled in a degree program as a student of a NextGenU.org institutional partner. If you think your institution might be interested in offering a degree with NextGenU.org, contact us.

      We hope you will find this a rewarding learning experience, and we count on your assessment and feedback to help us improve this training for future students.

      Here are the next steps to take the course and earn a certificate:

      • Complete the registration form,
      • Take the pre-test, and 
      • Begin the course with Module 1: Building Blocks of Biochemistry. In each lesson, read the description, complete all required readings and any required activity, as well as take the corresponding quizzes.
      • Study Materials

        We've utilized the Quizlet platform to create specialized flashcards designed to reinforce and test your knowledge throughout this course. Simply click the links to freely access them. Feel free to browse through our other sets of flashcards. Dive in and happy studying!

        • Module 1: Building Blocks of Biochemistry Flashcards.
        • Module 2: Enzymes Flashcards.
        • Module 3: Nonezymatic Proteins Flashcards.
        • Module 4: Carbohydrates Flashcards.
        • Module 5: Carbohydrate Metabolism Flashcards.
        • Module 6: Lipids Flashcards.
        • Module 7: Lipid and Amino Acid Metabolism Flashcards.
        • Module 8: DNA Flashcards.
        • Module 9: RNA Flashcards.
        • Module 10: Biological Membranes Flashcards.
        • Module 11: Aerobic Respiration Flashcards. 
        • Module 12: Bioenergetics Flashcards. 

        • Module 1: Building Blocks of Biochemistry

          Competency covered in this module:
          • Peptides.
          • Peptide bonds.
          • Sanger’s strategy to determine peptide structure.
          • Partial hydrolysis of peptides.
          • End-group analysis.
          • Insulin.
          • Edman degradation.
          • The strategy of peptide synthesis, the Merrifield method.
          • Amino and carboxyl group protection.
          • Formation of peptide bonds (fragment condensation approach.)
          • Structures of peptides and proteins.
          • Coenzymes.
          • Hemoglobin.
          • Pyrimidine and purine nucleosides.
          • Nucleotides.
          • Proteins.
          • Functions.
          • Shape and Composition.
          • Protein Structure.
          • The Folding Problem.
          • Fibrous Proteins.
          • Globular Proteins.
          • Protein Denaturation.
          • Causes of Denaturation.
          • Process of Denaturation.

          • Module 1: Lesson 1: Amino Acids found in Proteins and Acid-Base Chemistry of Amino Acids

            Student Learning Outcomes:
            Upon completion of this lesson, you will be able to:
            • Identify the basic structure of the amino acid and peptide bond.
            • Analyze and predict the chemical properties of the amino acid side group.
            • Determine the amino and carboxyl-terminal pKa.
            • Predict the impact of the local chemical environment on the pKa of the amino acid side group.
            • Determine the charge state of an amino acid at indicated pH; including the pH at which the amino acid is a zwitterion.

            Approximate time required for the readings for this lesson (at 144 words/minute): 2 hours.

            Click here to start this lesson

            1 URL
            • Required Learning Resources and Activities
            • Amino Acid URL

              Read the entire article. (40 minutes)

              Britannica - 2022

          • Module 1: Lesson 2: Peptide Bond Formation and Hydrolysis

            Student Learning Outcomes:
            Upon completion of this lesson, you will be able to:
            • Explain the chemical nature of the peptide bond.
            • Calculate the isoelectric point of a peptide.
            • Explain the reactions of amino acids and their impact on protein.
            • Analyze the importance of the reactions of cysteine-cysteine bonds.
            • Analyze the biological activities of peptides.
            • Compare the relative sizes of proteins.
            Approximate time required for the readings for this lesson (at 144 words/minute):  1 hour.

            Click here to start this lesson

            1 URL
            • Required Learning Resources and Activities
            • Peptides and Proteins URL

              Read the entire article. (20 minutes)

              Chemistry Libretexts - 2021

          • Module 1: Lesson 3: Protein Structure

            Student Learning Outcomes:
            Upon completion of this lesson, you will be able to:
            • Explain how proteins are classified using their physical properties and how these impact protein functions.
            • Explain the levels of protein structure, the bonds formed at each level, and the interaction/contribution of each level of organization to the overall protein structure.
            • Describe the physicochemical properties of proteins.
            • Identify the component and major parts of proteins.
            • Describe the methods used to separate and purify proteins.
            Approximate time required for the readings for this lesson (at 144 words/minute):  2 hours and 15 minutes.

            Click here to start this lesson

            1 URL
            • Required Learning Resources and Activities
            • Proteins URL

              Read the sections on classification, conformation, physicochemical properties, and levels of structural organization of proteins. (45 min)

              Britannica - 2020

          • Module 1: Lesson 4: Denaturation

            Student Learning Outcomes:
            Upon completion of this lesson, you will be able to:
            • Understand what protein denaturation is.
            • Explain the causes of protein denaturation.
            • Describe the process of denaturation.
            Approximate time required for the readings for this lesson (at 144 words/minute): 55 minutes.

            Click here to start this lesson

            1 URL, 1 Quiz
            • Required Learning Resources and Activities
            • Denaturation of Proteins URL

               Read the entire content and watch the videos. (Reading - 10) (Watching - 5)

              Byju's - 2022

            • Quiz: Module 1

              To access the quiz, click on the name of the quiz provided above. On the following screen, click the attempt quiz button to view the case studies and respond to the questions.

          • Module 2: Enzymes

            Competency covered in this module:
            • Enzymes.
            • Properties of enzymes.
            • Basics of enzyme catalysis.  
            • Enzymes: Activation Energy and Reaction Equilibrium. 
            • Classification of enzymes.  
            • Oxidoreductases.
            • Transferases.
            • Hydrolases.
            • Lyases.
            • Isomerases.
            • Ligases.
            • The Catalytic Activity of Enzymes.
            • Mechanisms of Enzymatic Catalysis.
            • Coenzymes.
            • Regulation of Enzyme Activity.
            • KM and Vmax Values.
            • The kcat/KM Criterion.
            • Biochemical Reactions that include multiple substrates.
            • Allosteric Enzymes.
            • Module 2: Lesson 1: Enzyme Classifications

              Student Learning Outcomes:
              Upon completion of this lesson, you will be able to:
              • Describe the classification of different types of enzymes and understand their physiological role.
              • Describe the basic properties of enzymes and their use as catalysts.
              Approximate time required for the readings for this lesson (at 144 words/minute): 2 hours and 15 minutes.

              Click here to start this lesson

              1 URL
              • Required Learning Resources and Activities
              • Classes of Enzymes URL

                Read the entire chapter. (45 minutes)

                Biomass, Biofuels, Biochemicals, Advances in Enzyme Catalysis and Technologies. (Pages 11-30) - 2020

            • Module 2: Lesson 2: The Central Role of Enzymes as Biological Catalysts

              Student Learning Outcomes:
              Upon completion of this lesson, you will be able to:
              • Explain the function of enzymes as catalysts making use of energy diagrams for catalyzed and uncatalyzed reactions.
              • Describe the principal mechanisms of enzymatic catalysis
              • Identify the principal characteristics and functions of coenzymes and their importance.
              • Describe how enzymes are regulated covalently and allosterically.
              Approximate time required for the readings for this lesson (at 144 words/minute): 1 hour.

              Click here to start this lesson

              1 URL
              • Required Learning Resources and Activities
              • The Central Role of Enzymes as Biological Catalysts URL

                Read the entire article. (20 minutes)

                Cooper GM. The Cell: A Molecular Approach. 2nd edition. Sunderland (MA): Sinauer Associates; 2000. The Central Role of Enzymes as Biological Catalysts - 2000

            • Module 2: Lesson 3: Enzyme Kinetics

              Student Learning Outcomes:
              Upon completion of this lesson, you will be able to:
              • Describe enzyme kinetics through equations and graphs.
              • Explain how the Michaels-Menten model can be used to characterize enzyme kinetics.
              • Describe why the kcat/KM criterion is important in enzyme kinetics.
              • Describe how the multiple substrate reactions are classified.
              • Determine if Allosteric enzymes obey Michaelis-Menten kinetics.
              Approximate time required for the readings for this lesson (at 144 words/minute): 1 hour and 10 minutes.

              Click here to start this lesson

              2 URLs, 1 Quiz
              • Required Learning Resources and Activities
              • Allosteric Interactions URL

                Read the entire article. (5 minutes)

                LibreTexts; UC Davis - 2022

              • CHEM 440 - Enzyme Kinetics URL

                Read the entire page. (15 minutes)

                Gonzaga College, CHEM 440 publications - 2022

              • Quiz: Module 2

                To access the quiz, click on the name of the quiz provided above. On the following screen, click the attempt quiz button to view the case studies and respond to the questions.

            • Module 3: Nonezymatic Proteins

              Competency covered in this module:
              • Structural proteins (collagen, elastin, keratins, actin, tubulin.)
              • Motor Proteins (ATPases, Myosin, Kinesins, dyneins.)
              • Binding Proteins.
              • Cell Adhesion Molecules (Cadherins, Integrins, Selectins.)
              • Immunoglobulins.
              • Ion Channels (ungated, voltage-gated, ligand-gated.)
              • Enzyme-linked Receptors
              • G-protein Coupled Receptors
              • Electrophoresis (Native PAGE, SDS-PAGE, Isoelectric Focusing)
              • Chromatography for protein isolation
              • Examining protein structure via X-ray crystallography and nuclear magnetic resonance spectroscopy.
              • Edman degradation for analyzing small proteins, Bradford Protein assay, bicinchoninic acid assay.
              • Module 3: Lesson 1: Cellular Function

                Student Learning Outcomes:
                Upon completion of this lesson, you will be able to:
                • Describe the nonenzymatic functions of structural proteins, motor proteins, binding proteins, cell adhesion molecules, and immunoglobulins.
                Approximate time required for the readings for this lesson (at 144 words/minute): 1 hour and 30 minutes.

                Click here to start this lesson

                1 URL
                • Required Learning Resources and Activities
                • Nonenzymatic Protein Function for the MCAT: Everything you Need to Know URL

                  Read the entire article. (30 minutes)

                  Shemmassian Academic Consulting - 2020

              • Module 3: Lesson 2: Biosignaling

                Student Learning Outcomes:
                Upon completion of this lesson, you will be able to:
                • Describe biosignaling of ion channels, enzyme-linked receptors, and G-protein coupled receptors.
                Approximate time required for the readings for this lesson (at 144 words/minute): 1 hour and 30 minutes.

                Click here to start this lesson

                1 URL
                • Required Learning Resources and Activities
                • Biochemistry 1: Biosignaling URL

                  Read the entire article. (30 minutes)

                  New Mexico State University - 2018

              • Module 3: Lesson 3: Protein Analysis Techniques

                Student Learning Outcomes:
                Upon completion of this lesson, you will be able to:
                • Describe the various protein analysis techniques.
                Approximate time required for the readings for this lesson (at 144 words/minute): 1 hour and 13 minutes.

                Click here to start this lesson

                1 URL, 1 Quiz
                • Required Learning Resources and Activities
                • Protein Analysis Techniques Explained URL

                  Read the entire article. (21 minutes)

                  ATA Scientific Pty Ltd. - 2019

                • Quiz: Module 3

                  To access the quiz, click on the name of the quiz provided above. On the following screen, click the attempt quiz button to view the case studies and respond to the questions.

              • Module 4: Carbohydrates

                Competency covered in this module:
                • Monosaccharides especially D-Fructose, D-Glucose, D-Galactose, and D-Mannose.
                • Stereochemistry (enantiomers, diastereomers, epimers of monosaccharides.)
                • Hexose conformations (Haworth and Fischer projections of D-Glucose.)
                • Mutarotation.
                • Oxidation and reduction of monosaccharides (Tollens' reagent, Benedict's reagent.)
                • Esterification and phosphorylation of monosaccharides.
                • Glycoside formation, glycosidic linkage formation.
                • Homoglycans.
                • Heteroglycans.
                • Glycoconjugates.
                • Proteoglycans.
                • Glycoproteins.
                • Mnemonic for carbohydrate configuration.
                • Mutarotation.
                • Ketoses.
                • Deoxy sugars.
                • Amino sugar, branched chain carbohydrates.
                • Glycosides.
                • Carbohydrate structure determination.
                • Oxidation and reduction of carbohydrates  (Benedict’s reagent), periodic acid oxidation of carbohydrates.
                • Isomerization and retro-aldol retro cleavage reactions of carbohydrates.

                • Required Learning Resources and Activities
              • Module 4: Lesson 1: Classification of Carbohydrates

                Student Learning Outcomes:
                Upon completion of this lesson, you will be able to:
                • Correctly classify carbohydrates according to their properties.
                Approximate time required for the readings for this lesson (at 144 words/minute): 1 hour and 30 minutes.

                Click here to start this lesson

                1 URL
                • Required Learning Resources and Activities
                • Carbohydrate Chemistry and Classification URL

                  Read the entire article. (30 minutes)

                  Carbohydrate chemistry and classification - 2013

              • Module 4: Lesson 2: Cyclic Carbohydrates

                Student Learning Outcomes:
                Upon completion of this lesson, you will be able to:
                • Describe carbohydrates that have five or more carbon atoms.
                Approximate time required for the readings for this lesson (at 144 words/minute): 39 minutes.

                Click here to start this lesson

                1 URL
                • Required Learning Resources and Activities
                • Cyclic Form of Carbohydrates URL

                  Watch the video. (13 minutes)

                  AK Lectures - 2021

              • Module 4: Lesson 3: Monosaccharides

                Student Learning Outcomes:
                Upon completion of this lesson, you will be able to:
                • Describe the different reactions of monosaccharides.
                Approximate time required for the readings for this lesson (at 144 words/minute): 3 hours.

                Click here to start this lesson

                1 URL
                • Required Learning Resources and Activities
                • Chapter 22: Carbohydrates URL

                  Read pages 5-31. (60 minutes)

                  The Hashemite University - 2020

              • Module 4: Lesson 4: Disaccharides

                Student Learning Outcomes:
                Upon completion of this lesson, you will be able to:
                • Identify the two monosaccharide units in a given disaccharide.
                • Determine the type of glycoside links present in a disaccharide structure.
                • Draw the structure of a disaccharide, given the structure of the monosaccharide units and the type of glycoside link involved.
                • Identify the structural features that determine whether or not a given disaccharide behaves as reducing sugar and undergoes mutarotation.
                • Determine the products formed from the hydrolysis of a disaccharide.
                Approximate time required for the readings for this lesson (at 144 words/minute): 3 hours and 25 minutes.

                Click here to start this lesson

                1 URL, 1 Forum, 1 Quiz
                • Required Learning Resources and Activities
                • Disaccharides URL
                  Read the entire article. (35 minutes)
                  Chem Libretexts - 2021
                • Reflection Activity: Health Applications of Biochemistry (90 minutes) Forum

                  General Instructions

                  In this learning activity, you will reflect on the health applications of biochemistry. To successfully achieve this, you will need to review all the study materials for Modules 1-4 on the building blocks of biochemistry, enzymes, non-enzymatic proteins, and carbohydrates.

                  Step 1: Select and Reflect

                  Select one of the introductory biochemistry topics below and reflect on how they are applied in practical/clinical settings to diagnose, treat, or understand pathological and healthy human states.

                  • Building blocks of biochemistry (amino acids, peptides, protein structure, and denaturation)
                  • Enzymes (classification, role of enzymes as biological catalysts, and enzyme kinetics)
                  • Non-enzymatic proteins (cellular functions, biosignaling, and protein analysis techniques)
                  • Carbohydrates (classification)

                   Step 2: Respond

                   Using supporting data to back your arguments, prepare a 400-500 word written piece which discusses any one of the following: 

                  • At least five industrial uses of amino acids, two of which must be of pharmaceutical and nutritional value
                  • Five specific enzyme-catalyzed reactions in the human body, two of which must be digestive and disease-related value
                  • The application of protein analyses techniques in medicine
                  • The role of carbohydrates in energy production and the mechanism of carbohydrate-induced disease states, for example, Obesity and Type II Diabetes Mellitus

                  Step 3: Share 

                  To share your work, click on the “Add a new discussion topic” button under this post and paste your work into the “Message” box. Make sure to reference others’ intellectual property when necessary. All references should follow 7th Edition APA formatting. For further instructions, see the resource on the Himmelfarb Health Sciences Library: APA citation resource (N.B.: references are excluded from word counts).

                  Step 4: Interact 

                  To complete the activity, you will need to reply to at least two posts made by your peers in a respectful and professional manner. Be sure your post engages your peers' ideas by including a reflection on their comments, sharing ideas on other potential difficulties and parties involved, or asking thought-provoking questions. If peer comments on your posting, please reply. To post a reply, click “Reply” on a particular discussion, write your feedback and then click on “Post to the forum.”

                • Quiz: Module 4

                  To access the quiz, click on the name of the quiz provided above. On the following screen, click the attempt quiz button to view the case studies and respond to the questions.

              • Module 5: Carbohydrate Metabolism

                Competency covered in this module:
                • GLUT 2 and GLUT 4.
                • Impact of blood glucose levels on GLUT 2 and GLUT 4 activity.
                • Key steps (intermediates, reactants, products, enzymes of glycolysis; hexokinase vs glycokinase.)
                • Fermentation via lactate dehydrogenase.
                • Glycolysis in erythrocytes.
                • Steps in Fructose and Galactose metabolism (intermediates, reactants, products, enzymes.)
                • Acetyl-CoA.
                • Pyruvate Dehydrogenase Complex.
                • The process and important steps.
                • Important enzymes
                • Oxidative phase.
                • Non-oxidative phase.

                • Module 5: Lesson 1: Glucose Transport

                  Student Learning Outcomes:
                  Upon completion of this lesson, you will be able to:
                  • Explain the mechanism of glucose transport in the body.
                  Approximate time required for the readings for this lesson (at 144 words/minute): 30 minutes.

                  Click here to start this lesson

                  1 URL
                  • Required Learning Resources and Activities
                  • Glucose Transporters: Physiological and Pathological Roles URL

                    Read from the beginning to Class III Facilitative Transporters. (10 minutes)

                    National Library of Medicine - 2016

                • Module 5: Lesson 2: Glycolysis

                  Student Learning Outcomes:
                  Upon completion of this lesson, you will be able to:
                  • Describe the key steps in glycolysis, fermentation via lactate dehydrogenase, and glycolysis in erythrocytes.

                  Approximate time required for the readings for this lesson (at 144 words/minute): 45 minutes.

                  Click here to start this lesson

                  1 URL
                  • Required Learning Resources and Activities
                  • Biochemistry, Glycolysis URL

                    Read the entire article. (15 minutes)


                • Module 5: Lesson 3: Metabolism of Fructose and Galactose

                  Student Learning Outcomes:
                  Upon completion of this lesson, you will be able to:
                  • Describe the key steps in Fructose and Galactose metabolism.

                  Approximate time required for the readings for this lesson (at 144 words/minute): 48 minutes.

                  Click here to start this lesson

                  1 URL
                  • Required Learning Resources and Activities
                  • Fructose and Galactose Breakdown Pathways URL

                    Watch the video and read the article. (16 minutes)

                    AK Lectures - 2021

                • Module 5: Lesson 4: Pyruvate Dehydrogenase

                  Student Learning Outcomes:
                  Upon completion of this lesson, you will be able to:
                  • Describe the Pyruvate Dehydrogenase Complex.
                  Approximate time required for the readings for this lesson (at 144 words/minute): 15 minutes.

                  Click here to start this lesson

                  1 URL
                  • Required Learning Resources and Activities
                  • Pyruvate Dehydrogenase (PDH) URL

                    Read the entire article. (5 minutes)

                    Abcam Plc.- 2022

                • Module 5: Lesson 5: Glycogenesis and Glycogenolysis

                  Student Learning Outcomes:
                  Upon completion of this lesson, you will be able to:
                  • Describe Glycogenesis and Glycogenolysis.
                  Approximate time required for the readings for this lesson (at 144 words/minute): 15 minutes.

                  Click here to start this lesson

                  1 URL
                  • Required Learning Resources and Activities
                  • Glycogenesis and Glycogenolysis URL

                    Read the entire document. (5 minutes)

                    Zydus Medical College and Hospital, Dahod - 2018

                • Module 5: Lesson 6: Gluconeogenesis

                  Student Learning Outcomes:
                  Upon completion of this lesson, you will be able to:
                  • Describe the process and important enzymes in glucogenesis.
                  Approximate time required for the readings for this lesson (at 144 words/minute): 1 hour.

                  Click here to start this lesson

                  1 URL
                  • Required Learning Resources and Activities
                  • Biochemistry, Gluconeogenesis URL

                    Read the entire article. (20 minutes)

                    National Library of Medicine - 2022

                • Module 5: Lesson 7: Pentose Phosphate Pathway

                  Student Learning Outcomes:
                  Upon completion of this lesson, you will be able to:
                  • Explain the oxidative and non-oxidative steps in Pentose Phosphate Pathway.
                  Approximate time required for the readings for this lesson (at 144 words/minute): 2 hours and 58 minutes.

                  Click here to start this lesson

                  1 URL, 1 Forum, 1 Quiz
                  • Required Learning Resources and Activities
                  • Pentose Phosphate Pathway URL

                    Read the entire article. (6 minutes)

                    Liberexts - 2022

                  • Case Scenario: Pathophysiology of Carbohydrate Metabolic Disorders (150 minutes) Forum

                    General Instructions

                    In this learning activity, you will read and analyze the two case scenarios provided and answer the questions related to carbohydrate metabolism.

                    Case Scenario 1

                    ABC is a 3-year-old boy who was referred to the hematologist after a pediatrician found him with an enlarged spleen (Splenomegaly), yellowing of the sclera of the eyes (Jaundice), and low blood volume (Anemic). In an interview with his mother, she hinted at a possible history of a blood-related disorders in her family, as revealed by the past medical diagnosis of other family members.

                    ABC was subjected to a test that measures the different types of hemoglobin in the blood (Hemoglobin Electrophoresis). The result was normal, and the Complete Blood Count (CBC) revealed normocytic anemia. However, bizarre erythrocytes, including spiculated cells, were observed on the peripheral smear.

                    ABC was diagnosed with pyruvate kinase deficiency.

                    Case Scenario 2

                    DEF is a 10-year-old girl with a grossly enlarged abdomen. Her medical history includes frequent sweating, episodes of weakness, and pallor that were eliminated by eating. DEF’s development had been undoubtedly slow. She began to sit at 11 months, walked freely/unassisted at two years, and was doing poorly in school.

                    Physical examination revealed normal blood pressure, temperature, and a normal pulse rate but a subnormal weight (20 kg). Her liver was enlarged, firm, and descended into the pelvis. The spleen and kidneys were not palpable.

                    Other physical examination parameters were within normal limits.

                    However, laboratory investigation reports revealed low blood glucose, low pH, high lactate, triglycerides, ketones, and free fatty acids. Again, the liver biopsy revealed high glycogen content. However, the hepatic glycogen structure was normal.

                    Very low Glucose-6-Phosphate levels were observed after an enzyme assay was performed on the biopsy tissue.

                    Step 1: Reflect

                    Read and reflect on the case scenarios above as they relate to carbohydrate metabolism.

                    Step 2: Respond

                    Based on the case scenarios above, prepare a 500-600 word written response that answers the following key questions:

                    Case Scenario 1:

                    1.  What is the biochemical basis of ABC’s disorder, and describe it?
                    2. Discuss the role of erythrocytes and ATP in the condition
                    3. Discuss the biochemical basis of anemia

                    Case Scenario 2:

                    1.  What might be the probable diagnosis of DEF’s condition?
                    2. Describe the pathophysiology of DEF’s condition

                    Step 3: Share 

                    To share your work, click on the “Add a new discussion topic” button under this post and paste your work into the “Message” box. Make sure to reference others’ intellectual property when necessary. All references should follow 7th Edition APA formatting. For further instructions, see the resource on the Himmelfarb Health Sciences Library: APA citation resource (N.B.: references are excluded from word counts).

                    Step 4: Interact 

                    To complete the activity, you will need to reply to at least two posts made by your peers in a respectful and professional manner. Be sure your post engages your peers' ideas by including a reflection on their comments, sharing ideas on other potential difficulties and parties involved, or asking thought-provoking questions. If a peer comments on your posting, please reply. To post a reply, click “Reply” on a particular discussion, write your feedback and then click on “Post to forum.”

                  • Quiz: Module 5

                    To access the quiz, click on the name of the quiz provided above. On the following screen, click the attempt quiz button to view the case studies and respond to the questions.

                • Module 6: Lipids

                  Competency covered in this module:
                  • Lipid types and structures.
                  • Terpenes and terpenoids.
                  • Steroids.
                  • Prostaglandins.
                  • Fat-Soluble Vitamins (A, D, E, K)
                  • Storage of lipids.
                  • Saponification.

                  • Module 6: Lesson 1: Lipid Classes

                    Student Learning Outcomes:
                    Upon completion of this lesson, you will be able to:
                    • Describe the unique characteristics and diverse structures of lipids.
                    • Compare and contrast triacylglycerides (triglycerides) and phospholipids.
                    • Describe how phospholipids are used to construct biological membranes.
                    Approximate time required for the readings for this lesson (at 144 words/minute): 45 minutes.

                    Click here to start this lesson

                    1 URL
                    • Required Learning Resources and Activities
                    • Lipid types and structures URL

                      Read the entire article. (15 minutes)

                      Openoregon.pressbooks.pub - N.D

                  • Module 6: Lesson 2: Signaling Lipids

                    Student Learning Outcomes:
                    Upon completion of this lesson, you will be able to:
                    • Describe the different structures of terpenes and terpenoids, steroids, prostaglandins, and Fat-Soluble Vitamins (A, D, E, K).
                    Approximate time required for the readings for this lesson (at 144 words/minute): 1 hour and 30 minutes.

                    Click here to start this lesson

                    1 URL
                    • Required Learning Resources and Activities
                    • Lipids URL

                      Read the following sections- terpenes, steroids, prostaglandins, and fat-soluble vitamins. (30 minutes)

                      William Reusch - 2013

                  • Module 6: Lesson 3: Lipid Storage

                    Student Learning Outcomes:
                    Upon completion of this lesson, you will be able to:
                    • Describe the storage of lipids in the body and the role of adipocytes.
                    Approximate time required for the readings for this lesson (at 144 words/minute):  21 minutes.

                    Click here to start this lesson

                    1 URL
                    • Required Learning Resources and Activities
                    • Adipose Tissue URL

                      Read the entire article. (7 minutes)

                      Osmosis - 2022

                  • Module 6: Lesson 4: Saponification

                    Student Learning Outcomes:
                    Upon completion of this lesson, you will be able to:
                    • Describe saponification, its reactions, mechanisms, effects, and uses.
                    Approximate time required for the readings for this lesson (at 144 words/minute): 1 hour and 10 minutes.

                    Click here to start this lesson

                    1 URL, 1 Quiz
                    • Required Learning Resources and Activities
                    • Saponification URL

                      Read the entire article. (20 minutes)

                      BYJU'S - 2022

                    • Quiz: Module 6

                      To access the quiz, click on the name of the quiz provided above. On the following screen, click the attempt quiz button to view the case studies and respond to the questions.

                  • Module 7: Lipid and Amino Acid Metabolism

                    Competency covered in this module:
                    • Digestion of lipids in the duodenum and small intestine.
                    • Micelle formation.
                    • Absorption.
                    • Mobilization and metabolism of triacylglycerols by the liver (hormone-sensitive lipase, lipoprotein lipase)
                    • Lipoproteins, Apolipoproteins, Chylomicrons, Very-low-density lipoprotein, Intermediate-density lipoprotein, Low-density lipoprotein, High-density lipoprotein, Apolipoproteins.
                    • Citrate shuttle.
                    • LCAT enzymes.
                    • CETP transfer process.
                    • Fatty acid biosynthesis (Acetyl-CoA Shuttling, Acetyl-CoA Carboxylase, Fatty Acid Synthase.)
                    • Triglyceride/triacylglycerol synthesis, oxidation (activation and fatty acid entry into mitochondria, beta-oxidation in mitochondria, Propionic Acid Pathway.)
                    • Ketogenesis.
                    • Ketolysis.
                    • Proteolysis.
                    • Transamination/deamination.
                    • Glucogenic amino acids. 
                    • Ketogenic amino acids.
                    • Urea cycle.
                    • Module 7: Lesson 1: Lipid Digestion and Absorption

                      Student Learning Outcomes:
                      Upon completion of this lesson, you will be able to:
                      • Describe lipid digestion, micelle formation, and absorption.
                      Approximate time required for the readings for this lesson (at 144 words/minute): 42 minutes.

                      Click here to start this lesson

                      1 URL
                      • Required Learning Resources and Activities
                      • Digestion and Absorption of Lipids URL

                        Read the entire article. (14 minutes)

                        University of Hawaii - N.D

                    • Module 7: Lesson 2: Lipid Mobilization

                      Student Learning Outcomes:
                      Upon completion of this lesson, you will be able to:
                      • Explain the mobilization and metabolism of triacylglycerols by the liver.
                      Approximate time required for the readings for this lesson (at 144 words/minute): 30 minutes.

                      Click here to start this lesson

                      1 URL
                      • Required Learning Resources and Activities
                      • Mobilization of Fatty Acids URL

                        Read the sections under mobilization of fatty acids, oxidation of fatty acids, and regulation of fatty acids oxidation. (10 minutes)

                        Britannica - 2022

                    • Module 7: Lesson 3: Lipid Transport

                      Student Learning Outcomes:
                      Upon completion of this lesson, you will be able to:
                      • Understand the mechanism of lipid transport in the body.
                      Approximate time required for the readings for this lesson (at 144 words/minute): 45 minutes.

                      Click here to start this lesson

                      1 URL
                      • Required Learning Resources and Activities
                      • Lipid Transport URL

                        Read the entire article. (15 minutes)

                        LibreTexts - 2021

                    • Module 7: Lesson 4: Cholesterol Metabolism

                      Student Learning Outcomes:
                      Upon completion of this lesson, you will be able to:
                      • Describe citrate shuttle, LCAT enzymes, and CETP transfer process in Cholesterol metabolism.
                      Approximate time required for the readings for this lesson (at 144 words/minute):  36 minutes.

                      Click here to start this lesson

                      1 URL
                      • Required Learning Resources and Activities
                      • Cholesterol Metabolism URL

                        Read the entire article. (12 minutes)

                        CUSABIO - 2022

                    • Module 7: Lesson 5: Fatty Acids and Triglycerols Metabolism

                      Student Learning Outcomes:
                      Upon completion of this lesson, you will be able to:
                      • Describe the metabolism of fatty acids and triglycerols.
                      Approximate time required for the readings for this lesson (at 144 words/minute):  1 hour.

                      Click here to start this lesson

                      1 URL
                      • Required Learning Resources and Activities
                      • Metabolism (Degradation) of Triglycerols and Fatty Acids URL

                        Read from pages 1-19. (20 minutes)

                        Charles University, Prague - ND

                    • Module 7: Lesson 6: Ketone Bodies

                      Student Learning Outcomes:
                      Upon completion of this lesson, you will be able to:
                      • Describe the synthesis and degradation of ketone bodies.
                      Approximate time required for the readings for this lesson (at 144 words/minute):  30 minutes.

                      Click here to start this lesson

                      1 URL
                      • Required Learning Resources and Activities
                      • Metabolism (Degradation) of Triglycerols and Fatty Acids URL

                        Read from pages 19-22. (10 minutes)

                        Charles University, Prague - N. D

                    • Module 7: Lesson 7: Protein Catabolism

                      Student Learning Outcomes:
                      Upon completion of this lesson, you will be able to:
                      • Describe the concept of breakdown of proteins.
                      Approximate time required for the readings for this lesson (at 144 words/minute): 3 hours and  25 minutes.

                      Click here to start this lesson

                      1 URL, 1 Forum, 1 Quiz
                      • Required Learning Resources and Activities
                      • Biochemistry: Protein Catabolism URL

                        Read the entire article. (25 minutes)

                        National Library of Medicine - 2021

                      • Case Scenario: Pathophysiology of Lipid and Amino Acid Metabolic Disorders (120 minutes) Forum

                        General Instructions

                        In this learning activity, you will read and analyze the case scenarios below and answer questions that relate to lipid and amino acid metabolism.

                        Case Scenario 1:

                        GHI is a 23-year-old lady who presented to the Outpatient Department of a specialist hospital with a medical history of spleen removal secondary to hepatomegaly, joint and bone pains with femoral fractures at different times, and a previous liver biopsy which revealed accumulation of glucosylceramide in wrinkled looking cells.

                        Case Scenario 2:

                        JKL is a female child born after a normal pregnancy. Her development after birth did not occur normally, as expected. Upon presentation to a health center at the age of eight, the physician noted she could not feed herself, could not speak like children of her age and could only manage to say a few words, and showed involuntary limb movements. Her cognitive development was not encouraging, and after being subjected to an I.Q. test, her score turned out to be 70. Her skin is light-colored, and she has blue eyes and patches of white hair across her head.

                        Examination revealed a musty odor in her urine with large amounts of a certain amino acid (X). In addition, an appreciable amount of a compound was isolated from the urine, which, when incubated with NADH and lactate dehydrogenase (LDH), produced the following compound:

                         

                        Step 1 Reflect

                        Read and reflect on the case scenarios above as they relate to lipid and amino acid metabolism.

                        Step 2: Respond

                        Based on the case scenarios above, prepare a 500-600 word written response that answers the following key questions:

                        Case Scenario 1:

                        1.  What might be the likely diagnosis of GHI?
                        2. Discuss the pathophysiology of GHI’s condition

                        Case Scenario 2:

                        1. What metabolic disorder could be JKL’s condition?
                        2. Describe how the condition can be experimentally confirmed
                        3. Name the techniques that can be used to identify the unknown amino acid in the urine
                        4. Mention the class of reaction involved in the formation of compound II from the amino acid

                        Step 3: Share

                        To share your work, click on the “Add a new discussion topic” button under this post and paste your work into the “Message” box. Make sure to reference others’ intellectual property when necessary. All references should follow 7th Edition APA formatting. For further instructions, see the resource on the Himmelfarb Health Sciences Library: APA citation resource (N.B.: references are excluded from word counts).

                        Step 4: Interact 

                        To complete the activity, you will need to reply to at least two posts made by your peers in a respectful and professional manner. Be sure your post engages your peers' ideas by including a reflection on their comments, sharing ideas on other potential difficulties and parties involved, or asking thought-provoking questions. If a peer comments on your posting, please reply. To post a reply, click “Reply” on a particular discussion, write your feedback and then click on “Post to forum.”

                      • Quiz: Module 7

                        To access the quiz, click on the name of the quiz provided above. On the following screen, click the attempt quiz button to view the case studies and respond to the questions.

                    • Module 8: DNA

                      Competency covered in this module:
                      • Nucleosides and nucleotides and names of nucleosides and nucleotides (Adenine, Guanine, Cytosine, Uracil, Thymine.)
                      • The sugar-phosphate backbone, DNA strand polarity, purines and pyrimidines, Watson-Crick model, denaturation, and reannealing.
                      • Histones.
                      • Heterochromatin and Euchromatin.
                      • Telomeres.
                      • Centromeres.
                      • Strand separation and origins of replication (replisome, replication origin, replication forks.) 
                      • DNA replication in prokaryotes vs eukaryotes, semi-conservative replication, replication of daughter strands (leading strand, lagging strand, Okazaki fragments, primase, DNA polymerases, DNA ligase.)
                      • Replicating ends of chromosomes (telomeres).
                      • Oncogenes and tumor suppressor genes (cancer, metastasis, oncogenes, proto-oncogenes, anti-oncogenes.)
                      • Proofreading and mismatch repair.
                      • Nucleotide excision repair.
                      • Base excision repair.
                      • DNA cloning and restriction enzymes (recombinant vector, restriction endonucleases, sticky ends.)
                      • DNA libraries and cDNA.
                      • Comparison of genomic and cDNA (expression) libraries.
                      • Hybridization (PCR, Gel electrophoresis, and Southern Blotting.)
                      • DNA sequencing.
                      • Applications of DNA technology (Gene therapy, Transgenic, and Knockout Mice.)
                      • Safety and ethics of genetic engineering.
                      • Module 8: Lesson 1: DNA Structure

                        Student Learning Outcomes:
                        Upon completion of this lesson, you will be able to:
                        • Describe nucleic acids and the role they play in DNA and RNA.
                        Approximate time required for the readings for this lesson (at 144 words/minute):  1 hour.

                        Click here to start this lesson

                        1 URL
                        • Required Learning Resources and Activities
                        • Nucleic Acids URL

                          Read the entire article. (20 minutes)

                          OpenStax textbooks - 2021

                      • Module 8: Lesson 2: Organization of Chromosomes in Eukaryotes

                        Student Learning Outcomes:
                        Upon completion of this lesson, you will be able to:
                        • Describe the organization of chromosomes in eukaryotes.
                        Approximate time required for the readings for this lesson (at 144 words/minute): 1 hour and 30 minutes.

                        Click here to start this lesson

                        1 URL
                        • Required Learning Resources and Activities
                        • Organization of Eukaryotic Chromosomes URL

                          Read the entire article. (30 minutes)

                          S. S. College, Jehanabad - 2018

                      • Module 8: Lesson 3: DNA Replication

                        Student Learning Outcomes:
                        Upon completion of this lesson, you will be able to:
                        • Explain prokaryotic and eukaryotic DNA replication.
                        Approximate time required for the readings for this lesson (at 144 words/minute):  30 minutes.

                        Click here to start this lesson

                        1 URL
                        • Required Learning Resources and Activities
                        • DNA Replication Steps and Process URL

                          Read the entire article. (10 minutes)

                          ThoughtCo.- 2019

                      • Module 8: Lesson 4: DNA Repair

                        Student Learning Outcomes:
                        Upon completion of this lesson, you will be able to:
                        • Describe the mechanisms of DNA repair.
                        Approximate time required for the readings for this lesson (at 144 words/minute):  45 minutes.

                        Click here to start this lesson

                        1 URL
                        • Required Learning Resources and Activities
                        • Mechanisms of DNA Repair URL

                          Read the article and watch the video. (15 minutes)

                          News Medical Life Sciences - 2022

                      • Module 8: Lesson 5: Recombinant DNA Technology

                        Student Learning Outcomes:
                        Upon completion of this lesson, you will be able to:
                        • Describe DNA cloning and restriction enzymes, DNA libraries and cDNA, hybridization, DNA sequencing, applications and DNA technology, and ethical considerations of genetic engineering.
                        Approximate time required for the readings for this lesson (at 144 words/minute):  3 hours and 10 minutes.

                        Click here to start this lesson

                        1 URL, 1 Forum, 1 Quiz
                        • Required Learning Resources and Activities
                        • Recombinant DNA URL

                          Read the entire article. (20 minutes)

                          Britannica -  2022

                        • Peer Activity: Applications of DNA Technology (120 minutes) Forum

                          General Instructions

                          In this activity, you will describe the role nucleic acids play in DNA and RNA structures, the organization of chromosomes in eukaryotes, DNA replication, mechanisms of DNA repair, and recombinant DNA technology. To accomplish this, you will review all the study materials for Module 8.

                          Step 1: Select and Reflect

                          Select one of the key topics under DNA below and reflect on how they are applied in practical/clinical settings to either diagnose, treat, or understand pathological and healthy human states.

                          • Describe DNA cloning and restriction enzymes
                          • Hybridization
                          • Applications and DNA technology
                          • Ethical considerations of genetic engineering

                          Step 2: Respond

                          Using supporting data to back your arguments, prepare a 500-600 word written piece that discusses any one of the following: 

                          • The application of genetically-engineered organisms in agriculture and improving the nutritional value of the plant
                          • The application of gene therapy in medicine
                          • Explain the use of recombinant DNA technology in medicine and forensics
                          • Ethical considerations in experimental human genome editing

                          Step 3: Share 

                          To share your work, click on the “Add a new discussion topic” button under this post and paste your work into the “Message” box. Make sure to reference others’ intellectual property when necessary. All references should follow 7th Edition APA formatting. For further instructions, see the resource on the Himmelfarb Health Sciences Library: APA citation resource (N.B.: references are excluded from word counts).

                          Step 4: Interact 

                          To complete the activity, evaluate and categorize the work from one of your peers based on items A - E of the rubric below. Provide a rationale for the grade you have provided, as well as comments or suggestions for improvement. To post a reply, click “Reply” on a particular discussion, write your feedback and then click on “Post to forum.” You can use the list below as an example:

                          Item A is  .…. because….  My suggestions for improvement are….
                          Item B is  .…. because….  My suggestions for improvement are….
                          Item C is  .…. because….  My suggestions for improvement are….
                          Item D is  .…. because….  My suggestions for improvement are….
                          Item E is  .…. because….  My suggestions for improvement are….

                        • Quiz: Module 8

                          To access the quiz, click on the name of the quiz provided above. On the following screen, click the attempt quiz button to view the case studies and respond to the questions.

                      • Module 9: RNA

                        Competency covered in this module:
                        • Nucleic acids.
                        • Structure and replication of DNA.
                        • Erwin Chargaff rules.
                        • DNA-directed protein biosynthesis.
                        • Genetic codes.
                        • DNA sequencing.
                        • Mechanism of transcription (helicase, topoisomerase, template strand, promoter regions, RNA polymerase II, TATA box.)
                        • Transcription factors, coding strand.
                        • Post-transcriptional processing .
                        •  Splicing (introns and extrons), 5' Cap, 3'Poly-A tail.
                        • Mechanism of translation (Initiation, elongation, termination.)
                        • Posttranslational processing (chaperones, phosphorylation, carboxylation, glycosylation, prenylation.)
                        • Operon structure.
                        • Jacob-Monod Model.
                        • Inducible systems (negative control, catabolite activator protein, positive control.)
                        • Repressible systems (corepressors.)
                        • Transcription factors (binding domain, DNA response element, activation domain.)
                        • Gene amplification (enhancers, gene duplication.)
                        • Regulation of chromatin structure (histone acetylation, DNA methylation.)
                        • Module 9: Lesson 1: Nucleic Acids

                          Student Learning Outcomes:
                          Upon completion of this lesson, you will be able to:
                          • Describe nucleic acids and the role they play in DNA and RNA.
                          Approximate time required for the readings for this lesson (at 144 words/minute):  1 hour.

                          Click here to start this lesson

                          2 URLs
                          • Required Learning Resources and Activities
                          • Nucleic Acids URL

                            Read the entire article. (20 minutes)

                            OpenStax textbooks - 2021

                          • Structure and Replication of DNA URL

                            Read everything except the exercises. (30 minutes)

                            LibreTexts Biology - 2022

                        • Module 9: Lesson 2: Transcription Factors and the Preinitiation Complex (PIC)

                          Student Learning Outcomes:
                          Upon completion of this lesson, you will be able to:
                          • Describe the preinitiation complex in RNA transcription.
                          • Describe the role of the transcription factors in assembling the preinitiation complex.
                          Approximate time required for the readings for this lesson (at 144 words/minute):  45 minutes.

                          Click here to start this lesson

                          1 URL
                          • Required Learning Resources and Activities
                          • Transcription and RNA Processing URL

                            Read the section on Transcription Factors and the Preinitiation Complex. (15 minutes)

                            Western Oregon University - N.D.

                        • Module 9: Lesson 3: Translation

                          Student Learning Outcomes:
                          Upon completion of this lesson, you will be able to:
                          • Describe the process of translation (including initiation, elongation, and termination) and explain which enzymes, protein factors, and energy sources are needed for each stage.
                          Approximate time required for the readings for this lesson (at 144 words/minute):  3 hours.

                          Click here to start this lesson

                          1 URL
                          • Required Learning Resources and Activities
                          • Translation URL

                            Read the sections on initiation, elongation, termination, and regulation of translation. (60 minutes)

                            Western Oregon University - N.D.

                        • Module 9: Lesson 4: Prokaryotic Gene Regulation

                          Student Learning Outcomes:
                          Upon completion of this lesson, you will be able to:
                          • Understand the main mechanisms used to regulate genes on a molecular level via proteins, gene products, and signaling pathways.
                          • Compare inducible operons and repressible operons.
                          • Describe why regulation of operons is important.
                          Approximate time required for the readings for this lesson (at 144 words/minute):  1 hour and 15 minutes.

                          Click here to start this lesson

                          1 URL
                          • Required Learning Resources and Activities
                          • Transcriptional Control and Epigenesis URL

                            Read the section on prokaryotic gene regulation. (25 minutes)

                            Western Oregon University - N. D

                        • Module 9: Lesson 5: Eukaryotic Gene Regulation

                          Student Learning Outcomes:
                          Upon completion of this lesson, you will be able to:
                          • Define differential gene expression.
                          • Distinguish between heterochromatin and euchromatin.
                          • Explain how DNA methylation and histone acetylation affects chromatin structure and the regulation of transcription.
                          • Define epigenetic inheritance.
                          • Describe the role of the transcription initiation complex.
                          • Define control elements and explain how they influence transcription.
                          • Distinguish between general and specific transcription factors.
                          • Explain the role of promoters, enhancers, activators, and repressors in transcriptional control.
                          • Explain how eukaryotic genes can be coordinately expressed.
                          • Describe the process and significance of alternative RNA splicing.
                          • Describe the processing of pre-mRNA in eukaryotes.
                          • Describe factors that influence the lifespan of mRNA in the cytoplasm.
                          • Explain how gene expression may be controlled at the translational and posttranslational level.
                          Approximate time required for the readings for this lesson (at 144 words/minute):  3 hours and 25 minutes.

                          Click here to start this lesson

                          1 URL, 1 Forum, 1 Quiz
                          • Required Learning Resources and Activities
                          • Eukaryotic Gene Regulation URL

                            Read the section under eukaryotic gene regulation. (25 minutes)

                            Western Oregon University - N. D

                          • Peer Activity: Applications of RNA Technology (120 minutes) Forum

                            General Instructions

                            In this activity, you will describe transcription factors and the preinitiation complex (PIC), the process of translation, prokaryotic gene regulation, and eukaryotic gene regulation. To achieve this, you will review all the study materials for Module 9.

                            Step 1: Select and Reflect

                            Read “Translation” from the learning resources under RNA.

                            Step 2: Respond

                            Using supporting data to back your arguments, prepare a 500-600 word written piece which discusses the following:

                            • Explain, in detail, the step-by-step process of translating the language of nucleotides into the language of amino acids in prokaryotes and eukaryotes

                            Step 3: Share 

                            To share your work, click on the “Add a new discussion topic” button under this post and paste your work into the “Message” box. Make sure to reference others’ intellectual property when necessary. All references should follow 7th Edition APA formatting. For further instructions, see the resource on the Himmelfarb Health Sciences Library: APA citation resource (N.B.: references are excluded from word counts).

                            Step 4: Interact 

                            To complete the activity, evaluate and categorize the work from one of your peers based on items A - E of the rubric below. Provide a rationale for the grade you have provided, as well as comments or suggestions for improvement. To post a reply, click “Reply” on a particular discussion, write your feedback and then click on “Post to forum.” You can use the list below as an example:

                            Item A is  .…. because….  My suggestions for improvement are….
                            Item B is  .…. because….  My suggestions for improvement are….
                            Item C is  .…. because….  My suggestions for improvement are….
                            Item D is  .…. because….  My suggestions for improvement are….
                            Item E is  .…. because….  My suggestions for improvement are….

                          • Quiz: Module 9

                            To access the quiz, click on the name of the quiz provided above. On the following screen, click the attempt quiz button to view the case studies and respond to the questions.

                        • Module 10: Biological Membranes

                          Competency covered in this module:
                          • Membrane structure and function.
                          • Membrane dynamics (phospholipids, lipid rafts, flippases.)
                          • Lipids (fatty acids and triacylglycerols.)
                          • Phospholipids.
                          • Sphingolipids.
                          • Cholesterol and Steroids.
                          • Waxes.
                          • Proteins (transmembrane, embedded, integral, peripheral.)
                          • Carbohydrates.
                          • Membrane receptors.
                          • Concentration gradients.
                          • Passive transport (simple diffusion, osmosis, facilitated diffusion.)
                          • Active transport.
                          • Endocytosis and exocytosis.
                          • Membrane potential (Sodium-Potassium Pump, Goldman-Hodgkin-Katz voltage equation.)
                          • Module 10: Lesson 1: Fluid Mosaic Model

                            Student Learning Outcomes:
                            Upon completion of this lesson, you will be able to:
                            • Explain the structure and functions of membranes.
                            Approximate time required for the readings for this lesson (at 144 words/minute):  30 minutes.

                            Click here to start this lesson

                            1 URL
                            • Required Learning Resources and Activities
                            • Fluid Mosaic Model URL

                              Read the entire article. (10 minutes)

                              LibreTexts: Biology - 2022

                          • Module 10: Lesson 2: Membrane Components

                            Student Learning Outcomes:
                            Upon completion of this lesson, you will be able to:
                            • Describe the components of a membrane and membrane fluidity
                            Approximate time required for the readings for this lesson (at 144 words/minute):  54 minutes.

                            Click here to start this lesson

                            1 URL
                            • Required Learning Resources and Activities
                            • Components and Structure URL

                              Read the entire article except the "Fluid Mosaic Model" section (18 minutes)

                              LibreTexts: Biology - 2022

                          • Module 10: Lesson 3: Membrane Transport

                            Student Learning Outcomes:
                            Upon completion of this lesson, you will be able to:
                            • Describe membrane transport in relation to concentration gradient and active/passive transport.
                            Approximate time required for the readings for this lesson (at 144 words/minute):  1 hour.

                            Click here to start this lesson

                            1 URL
                            • Required Learning Resources and Activities
                            • Membrane Transport URL

                              Read the entire article. (20 minutes)

                              LibreTexts: Biology - 2022

                          • Module 10: Lesson 4: Specialized Membranes

                            Student Learning Outcomes:
                            Upon completion of this lesson, you will be able to:
                            • Explain membrane potential.
                            Approximate time required for the readings for this lesson (at 144 words/minute):  1 hour and 10 minutes.

                            Click here to start this lesson

                            1 URL, 1 Quiz
                            • Required Learning Resources and Activities
                            • Membrane Potential URL

                              Read the entire article and watch the embedded YouTube video. (20 minutes)

                              LibreTexts: Biology - 2022

                            • Quiz: Module 10

                              To access the quiz, click on the name of the quiz provided above. On the following screen, click the attempt quiz button to view the case studies and respond to the questions.

                          • Module 11: Aerobic Respiration

                            Competency covered in this module:
                            • Methods of forming Acetyl-CoA (pyruvate dehydrogenase complex, fatty acid oxidation, amino acid catabolism, ketones, alcohol consumption.)
                            • Purpose of the Citric Acid Cycle: key steps, intermediates, reactants, products, enzymes in the Citric Acid Cycle, and regulation of the cycle.
                            • Structure of Mitochondria.
                            • Electron flow and complexes (NADH-CoQ Oxidoreductase, Succinate-CoQ Oxidoreductase, CoQH2-Cytochrome C Oxidoreductase, Cytochrome C Oxidase.)
                            • The Proton-Motive Force.
                            • NADH shuttles (Glycerol-3-Phosphate Shuttle and Malate-Aspartate Shuttle.)
                            • Chemiosmotic coupling.
                            • Respiratory control.

                            • Module 11: Lesson 1: Acetyl CoA

                              Student Learning Outcomes:
                              Upon completion of this lesson, you will be able to:
                              • Explain the different methods of Acetyl-CoA formation.
                              Approximate time required for the readings for this lesson (at 144 words/minute):  15 minutes.

                              Click here to start this lesson

                              1 URL
                              • Required Learning Resources and Activities
                              • Acetyl CoA Production URL

                                Read the entire article. (5 minutes)

                                Jack Westin - N.D

                            • Module 11: Lesson 2: Citric Acid Cycle

                              Student Learning Outcomes:
                              Upon completion of this lesson, you will be able to:
                              • Explain the purpose and key steps in Citric Acid Cycle.
                              Approximate time required for the readings for this lesson (at 144 words/minute): 24 minutes.

                              Click here to start this lesson

                              1 URL
                              • Required Learning Resources and Activities
                              • The Citric Acid Cycle URL

                                Read the entire article. (8 minutes)

                                Merck KGaA - 2022

                            • Module 11: Lesson 3: Electron Transport Chain

                              Student Learning Outcomes:
                              Upon completion of this lesson, you will be able to:
                              • Describe the electron transport chain in aerobic respiration
                              Approximate time required for the readings for this lesson (at 144 words/minute):  39 minutes.

                              Click here to start this lesson

                              1 URL
                              • Required Learning Resources and Activities
                              • Electron Transport Chain URL

                                Read the entire article. (13 minutes)

                                Lumen Learning - N. D

                            • Module 11: Lesson 4: Oxidative Phosphorylation

                              Student Learning Outcomes:
                              Upon completion of this lesson, you will be able to:
                              • Describe oxidative phosphorylation.
                              Approximate time required for the readings for this lesson (at 144 words/minute):  52 minutes.

                              Click here to start this lesson

                              1 URL, 1 Quiz
                              • Required Learning Resources and Activities
                              • Oxidative Phosphorylation URL

                                Read the entire article. (14 minutes)

                                CUSABIO Technology LLC - 2022

                              • Quiz: Module 11

                                To access the quiz, click on the name of the quiz provided above. On the following screen, click the attempt quiz button to view the case studies and respond to the questions.

                            • Module 12: Bioenergetics

                              Competency covered in this module:
                              • Biological systems as closed systems.
                              • Free energy.
                              • Enthalpy.
                              • Entropy.
                              • Physiological conditions.
                              • ATP as an energy carrier.
                              • Hydrolysis and coupling.
                              • Phosphoryl group transfers.
                              • Electron carriers (NADH, NADPH, FADH2).
                              • Flavoproteins.
                              • Postprandial (absorptive) state (anabolism, catabolism.)
                              • Postabsorptive (fasting) state (counterregulatory hormones.)
                              • Prolonged fasting (starvation.)
                              • Insulin and glucagon.
                              • Glucocorticoids.
                              • Catecholamines.
                              • Hyroid hormones.
                              • Liver.
                              • Adipose tissue.
                              • Resting muscle.
                              • Active muscle.
                              • Cardiac muscle.
                              • Brain.
                              • Analysis of metabolism (respirometry, Basal Metabolic Rate.)
                              • Regulation of body mass.
                              • Module 12: Lesson 1: Thermodynamics and Bioenergetics

                                Student Learning Outcomes:
                                Upon completion of this lesson, you will be able to:
                                • Explain the concept of thermodynamics and bioenergetics.
                                Approximate time required for the readings for this lesson (at 144 words/minute):  45 minutes.

                                Click here to start this lesson

                                1 URL
                                • Required Learning Resources and Activities
                                • Bioenergetics/Thermodynamics URL

                                  Read the entire article. (15 minutes)

                                  Jack Westin - N.D.

                              • Module 12: Lesson 2: Adenosine Triphosphate

                                Student Learning Outcomes:
                                Upon completion of this lesson, you will be able to:
                                • Describe the role of ATP as an energy carrier, its hydrolysis, and coupling.
                                Approximate time required for the readings for this lesson (at 144 words/minute):  30 minutes.

                                Click here to start this lesson

                                1 URL
                                • Required Learning Resources and Activities
                                • Adenosine Triphosphate URL

                                  Read the entire article. (10 minutes)

                                  Georgia State University - N.D.

                              • Module 12: Lesson 3: Biological Oxidation and Reduction

                                Student Learning Outcomes:
                                Upon completion of this lesson, you will be able to:
                                • Explain electronic careers and flavoproteins.
                                Approximate time required for the readings for this lesson (at 144 words/minute):  30 minutes.

                                Click here to start this lesson

                                1 URL
                                • Required Learning Resources and Activities
                                • Biological Oxidation-Reduction (BC/GC) URL

                                  Read the entire article. (10 minutes)

                                  Jack Westin - N.D.

                              • Module 12: Lesson 4: Metabolic States

                                Student Learning Outcomes:
                                Upon completion of this lesson, you will be able to:
                                • Explain postprandial, postabsorptive, and prolonged fasting.
                                Approximate time required for the readings for this lesson (at 144 words/minute):  30 minutes.

                                Click here to start this lesson

                                1 URL
                                • Required Learning Resources and Activities
                                • Metabolic States of the Body URL

                                  Read the entire article. (10 minutes)

                                  Lumen Learning - N.D.

                              • Module 12: Lesson 5: Hormonal Regulation of Metabolism

                                Student Learning Outcomes:
                                Upon completion of this lesson, you will be able to:
                                • Describe the roles of hormones in metabolism.
                                Approximate time required for the readings for this lesson (at 144 words/minute):  30 minutes.

                                Click here to start this lesson

                                1 URL
                                • Required Learning Resources and Activities
                                • Hormonal Regulation of Fuel Metabolism URL

                                  Read the entire article. (10 minutes)

                                  Jack Westin - N.D.

                              • Module 12: Lesson 6: Tissue-Specific Metabolism

                                Student Learning Outcomes:
                                Upon completion of this lesson, you will be able to:
                                • Describe metabolism in the liver, adipose tissue, resting muscle, active muscle, cardiac muscle, and brain.
                                Approximate time required for the readings for this lesson (at 144 words/minute):  30 minutes.

                                Click here to start this lesson

                                1 URL
                                • Required Learning Resources and Activities
                                • Tissue-Specific Metabolism URL

                                  Read the entire article. (10 minutes)

                                  Jack Westin - N.D.

                              • Module 12: Lesson 7: Integrative Metabolism

                                Student Learning Outcomes:
                                Upon completion of this lesson, you will be able to:
                                • Describe cellular respiration, basal metabolic rate, and regulation of body mass.
                                Approximate time required for the readings for this lesson (at 144 words/minute):  6 hours and 4 minutes.

                                Click here to start this lesson

                                1 URL, 1 Forum, 1 Quiz
                                • Required Learning Resources and Activities
                                • Metabolism, and Energy Balance URL

                                  Read the entire article. (68 minutes)

                                  University of Saskachewan - 2022

                                • Reflection: Energy Production by the Human Body (150 minutes) Forum

                                  General Instructions

                                  In this activity, you will reflect on all you have read about thermodynamics and bioenergetics, ATP, biological oxidation and reduction, metabolic states, hormonal regulation and metabolism, tissue-specific metabolism, and integrative metabolism. To accomplish this, you will review all the study materials for Module 12. 

                                  Step 1: Select and Reflect

                                  Select one of the topics of biochemistry below and reflect on their practical effects on the human body.

                                  • Metabolic States
                                  • Hormonal Regulation of Metabolism
                                  • Tissue-Specific Metabolism
                                  • Integrative Metabolism

                                  Step 2: Respond

                                  Using supporting data to back your arguments, prepare a 400-500 word written piece which discusses any one of the following:

                                  • Explain how the body processes glucose when the body is starved of fuel
                                  • Describe the role of hormones in metabolism
                                  • Describe the metabolic profile of skeletal muscle
                                  • Describe the mechanism of appetite control in the human body

                                  Step 3: Share 

                                  To share your work, click on the “Add a new discussion topic” button under this post and paste your work into the “Message” box. Make sure to reference others’ intellectual property when necessary. All references should follow 7th Edition APA formatting. For further instructions, see the resource on the Himmelfarb Health Sciences Library: APA citation resource (N.B.: references are excluded from word counts).

                                  Step 4: Interact 

                                  To complete the activity, you will need to reply to at least two posts made by your peers in a respectful and professional manner. Be sure your post engages your peers' ideas by including a reflection on their comments, sharing ideas on other potential difficulties and parties involved, or asking thought-provoking questions. If peer comments on your posting, please reply. To post a reply, click “Reply” on a particular discussion, write your feedback and then click on “Post to the forum.”

                                • Quiz: Module 12

                                  To access the quiz, click on the name of the quiz provided above. On the following screen, click the attempt quiz button to view the case studies and respond to the questions.

                              • Final Exam

                                Click here to start Final Examination

                                • Final Exam Quiz
                                  Restricted Not available unless:
                                  • All of:
                                    • The activity Course Registration is marked complete
                                    • The activity Pre-Test is marked complete
                                    • The activity Quiz: Module 1 is marked complete
                                    • The activity Quiz: Module 2 is marked complete
                                    • The activity Quiz: Module 3 is marked complete
                                    • The activity Quiz: Module 4 is marked complete
                                    • The activity Quiz: Module 5 is marked complete
                                    • The activity Quiz: Module 6 is marked complete
                                    • The activity Quiz: Module 7 is marked complete
                                    • The activity Quiz: Module 8 is marked complete
                                    • The activity Quiz: Module 9 is marked complete
                                    • The activity Quiz: Module 10 is marked complete
                                    • The activity Quiz: Module 11 is marked complete
                                    • The activity Quiz: Module 12 is marked complete
                                  • All of:
                                    • The activity Reflection Activity: Health Applications of Biochemistry (90 minutes) is marked complete
                                    • The activity Case Scenario: Pathophysiology of Carbohydrate Metabolic Disorders (150 minutes) is marked complete
                                    • The activity Case Scenario: Pathophysiology of Lipid and Amino Acid Metabolic Disorders (120 minutes) is marked complete
                                    • The activity Peer Activity: Applications of DNA Technology (120 minutes) is marked complete
                                    • The activity Peer Activity: Applications of RNA Technology (120 minutes) is marked complete
                                    • The activity Reflection: Energy Production by the Human Body (150 minutes) is marked complete

                                  To take the final exam, you must complete all quizzes and complete all the required activities. The final exam consists of 40 questions, and you will have 40 minutes to complete it. When the time is over, you will have two minutes to submit your attempt before it expires, and your progress is discarded. You will not be able to answer additional questions in the grace period.

                                  To access the exam, click on the name of the exam provided above. On the following screen, click the attempt quiz button to respond to the questions.

                              • Course and Self Evaluation & Certificate

                                In this section, you can provide feedback about this course to help us make NextGenU.org better. Once evaluations are completed, you will be able to download your certificate of completion.

                                Click here give your feedback

                                • Course Evaluation Questionnaire
                                  Restricted Not available unless: The activity Final Exam is marked complete
                                • Self Evaluation Questionnaire
                                  Restricted Not available unless: The activity Final Exam is marked complete
                              • Learning activities

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                              Course Activities and Resources

                              • Syllabus
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                              • Quizzes

                              • Biochem
                              • Home Page
                              • How to create an account and enroll in the course?
                              • Biochemistry Homepage
                              • Study Materials
                              • Module 1: Building Blocks of Biochemistry
                              • Module 1: Lesson 1: Amino Acids found in Proteins and Acid-Base Chemistry of Amino Acids
                              • Module 1: Lesson 2: Peptide Bond Formation and Hydrolysis
                              • Module 1: Lesson 3: Protein Structure
                              • Module 1: Lesson 4: Denaturation
                              • Module 2: Enzymes
                              • Module 2: Lesson 1: Enzyme Classifications
                              • Module 2: Lesson 2: The Central Role of Enzymes as Biological Catalysts
                              • Module 2: Lesson 3: Enzyme Kinetics
                              • Module 3: Nonezymatic Proteins
                              • Module 3: Lesson 1: Cellular Function
                              • Module 3: Lesson 2: Biosignaling
                              • Module 3: Lesson 3: Protein Analysis Techniques
                              • Module 4: Carbohydrates
                              • Module 4: Lesson 1: Classification of Carbohydrates
                              • Module 4: Lesson 2: Cyclic Carbohydrates
                              • Module 4: Lesson 3: Monosaccharides
                              • Module 4: Lesson 4: Disaccharides
                              • Module 5: Carbohydrate Metabolism
                              • Module 5: Lesson 1: Glucose Transport
                              • Module 5: Lesson 2: Glycolysis
                              • Module 5: Lesson 3: Metabolism of Fructose and Galactose
                              • Module 5: Lesson 4: Pyruvate Dehydrogenase
                              • Module 5: Lesson 5: Glycogenesis and Glycogenolysis
                              • Module 5: Lesson 6: Gluconeogenesis
                              • Module 5: Lesson 7: Pentose Phosphate Pathway
                              • Module 6: Lipids
                              • Module 6: Lesson 1: Lipid Classes
                              • Module 6: Lesson 2: Signaling Lipids
                              • Module 6: Lesson 3: Lipid Storage
                              • Module 6: Lesson 4: Saponification
                              • Module 7: Lipid and Amino Acid Metabolism
                              • Module 7: Lesson 1: Lipid Digestion and Absorption
                              • Module 7: Lesson 2: Lipid Mobilization
                              • Module 7: Lesson 3: Lipid Transport
                              • Module 7: Lesson 4: Cholesterol Metabolism
                              • Module 7: Lesson 5: Fatty Acids and Triglycerols Metabolism
                              • Module 7: Lesson 6: Ketone Bodies
                              • Module 7: Lesson 7: Protein Catabolism
                              • Module 8: DNA
                              • Module 8: Lesson 1: DNA Structure
                              • Module 8: Lesson 2: Organization of Chromosomes in Eukaryotes
                              • Module 8: Lesson 3: DNA Replication
                              • Module 8: Lesson 4: DNA Repair
                              • Module 8: Lesson 5: Recombinant DNA Technology
                              • Module 9: RNA
                              • Module 9: Lesson 1: Nucleic Acids
                              • Module 9: Lesson 2: Transcription Factors and the Preinitiation Complex (PIC)
                              • Module 9: Lesson 3: Translation
                              • Module 9: Lesson 4: Prokaryotic Gene Regulation
                              • Module 9: Lesson 5: Eukaryotic Gene Regulation
                              • Module 10: Biological Membranes
                              • Module 10: Lesson 1: Fluid Mosaic Model
                              • Module 10: Lesson 2: Membrane Components
                              • Module 10: Lesson 3: Membrane Transport
                              • Module 10: Lesson 4: Specialized Membranes
                              • Module 11: Aerobic Respiration
                              • Module 11: Lesson 1: Acetyl CoA
                              • Module 11: Lesson 2: Citric Acid Cycle
                              • Module 11: Lesson 3: Electron Transport Chain
                              • Module 11: Lesson 4: Oxidative Phosphorylation
                              • Module 12: Bioenergetics
                              • Module 12: Lesson 1: Thermodynamics and Bioenergetics
                              • Module 12: Lesson 2: Adenosine Triphosphate
                              • Module 12: Lesson 3: Biological Oxidation and Reduction
                              • Module 12: Lesson 4: Metabolic States
                              • Module 12: Lesson 5: Hormonal Regulation of Metabolism
                              • Module 12: Lesson 6: Tissue-Specific Metabolism
                              • Module 12: Lesson 7: Integrative Metabolism
                              • Final Exam
                              • Course and Self Evaluation & Certificate
                              • Learning activities
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